GI Health
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February 28, 2025

The Digestive System Explained: Improve Your Gut Health

Written By
Morgan Schneller MScN, CN
Medically Reviewed by
Updated On
March 3, 2025

Did you know the digestive system processes around 60 tons of food in a lifetime? Or that the entire human gastrointestinal (GI) tract can be up to 30 feet long, roughly the length of a typical house?

This complex system is one of the largest common boundaries between the host, environmental factors, and the immune system. 

The gut microbiome, an ecosystem of microorganisms that form an intricate and mutually beneficial relationship, resides along the GI tract.

Research reminds us that digestion and the gut microbiome are crucial for maintaining overall health, well-being, mood regulation, and immune function. 

This article provides an in-depth, easy-to-understand explanation of the digestive system and explores tips for optimizing gut health.

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The Basics of Digestion

Digestion is the biological process by which our bodies break down food physically and chemically into smaller molecules that can be absorbed and assimilated into the body. 

The digestive system is made up of the hollow organs of the GI tract, including the mouth, esophagus, stomach, small intestine, large intestine, anus, and other solid accessory organs, including the liver, gallbladder, and pancreas. 

The hollow organs are joined in a long tube from the mouth to the anus that makes up the GI tract

The main functions of the GI tract are the ingestion and breakdown of food, nutrient absorption, secretion of water and enzymes, and elimination of waste products. Each organ along the digestive tract plays a vital role in this process. 

This hard-working system is key to absorbing essential nutrients and efficiently expelling waste products.

Why Digestion Matters

A healthy digestive system is foundational for overall well-being. Proteins, carbohydrates, fats, vitamins, minerals, and water are broken down, absorbed, and used throughout the body for energy, growth, cell repair, and immune function

These nutrients contribute to countless reactions throughout the body that help our systems maintain health and homeostasis. 

Common problems caused by poor digestion include nutrient deficiencies, bloating, diarrhea, constipation, nausea, vomiting, or discomfort. More widespread concerns like sleep disturbances, mood changes, or immune dysfunction have also been linked to GI health. 

Ongoing issues may contribute to digestive disorders, including GERD, IBS, IBD, and celiac disease. Understanding the digestive process is key to identifying and addressing these issues early.

Research shows a significant link between gut health and systemic disease states, such as autoimmune disorders, allergies, and inflammatory diseases

This is primarily due to compromised intestinal integrity and the role of the gut microbiome in balancing inflammation and the immune response. 

The Organs of the Digestive System:

  • Mouth 
  • Esophagus
  • Stomach
  • Liver
  • Gallbladder
  • Pancreas
  • Small Intestine
  • Large Intestine
  • Anus

The Stages of Digestion

Digestion requires various stages to break down food into nutrients. 

1. Ingestion and Chewing

This stage requires various salivary enzymes to start the digestive process, which begins in the mouth, where food is chewed with the teeth and broken down by saliva. 

The Role of Saliva and Enzymes 

Saliva is rich in digestive enzymes that moisten food and start to break down carbohydrates enzymatically. 

The enzyme salivary amylase initiates the conversion of carbohydrates into sugars, and lingual lipase starts the digestion of fats into fatty acids, making it easier for the body to absorb these nutrients later.

Why Proper Chewing is Important 

Proper chewing aids the body in extracting essential nutrients to provide the most benefit from the food you eat. 

Chewing helps increase the surface area of the food particles and effectively mixes the food with saliva to prepare for the next stage of digestion, where a food bolus is formed and moved down the pharynx, down the esophagus, and into the stomach. 

2. Stomach Breakdown 

In the stomach, mechanical and chemical processes continue to change the physical properties of the food. 

Gastric Juices and Their Function 

The stomach's pH level is tightly regulated and crucial for proper digestion. Gastric juices that contain hydrochloric acid and digestive enzymes create an acidic environment to break down protein and kill harmful bacteria. 

The Churning Process

The stomach's muscular walls rhythmically contract, churning the food and mixing it with digestive juices. During this mechanical process, food particles combine with digestive juices to further reduce particle size and create a mixture called chyme

Wave-like gastric contractions, known as peristalsis, help move food along the GI tract and into the small intestine. 

3. Absorption in the Small Intestine 

The small intestine is the longest part of the gastrointestinal tract and has three segments: the duodenum, jejunum, and ileum. This is where  90% of food is converted through the digestive process into absorbable nutrients. 

Key Nutrients Absorbed 

Some of the enzymes needed to digest carbohydrates are synthesized from bacteria in the small intestine. The breakdown of proteins, carbohydrates, and fats is completed in the small intestine, while water is moved from the bloodstream into the GI tract to help break down food.

Role of Villi in Nutrient Absorption

Tiny, finger-like projections called villi line the small intestine. Each villus has multiple microvilli that dramatically increase the surface area available for nutrient absorption. Villi also contain blood vessels that help absorb nutrients and pass them to the larger circulatory system. 

The ileocecal valve joins the small and large intestine, where the remaining nutrients are absorbed. 

4. Waste Elimination 

The large intestine is about 6 feet long and consists of the cecum, ascending colon, transverse colon, descending colon, and sigmoid colon. 

The Large Intestine's Role 

The large intestine absorbs the remaining water from indigestible food. The waste products of digestion are compacted into stool, which is later expelled from the body. The large intestine's primary function is to house the majority of the gut microbiome.

Maintaining a Healthy Gut Microbiome 

The gut microbiome helps break down residual dietary fibers and undigested food. The microbes produce vitamins such as niacin, vitamin B1, and vitamin K and protect against harmful pathogens. 

The microbiome synthesizes biologically active molecules, informs behavior and mood, and modulates the immune response. 

A disruption to the balance of species in the microbiome, or dysbiosis, can lead to increased disease risk, chronic conditions, and autoimmune disease states. 

Digestive Enzymes and Their Role 

Made by the organs along the gastrointestinal tract, digestive enzymes are a vital part of the digestive process.

What are Digestive Enzymes?

Digestive enzymes are proteins produced along the GI tract that help the chemical breakdown of food into absorbable nutrients. 

Types of Enzymes and their Sources

Enzymes work in various organs, such as the salivary glands, stomach, pancreas, and small intestine, to facilitate enzymatic reactions that help digest carbohydrates, fats, and proteins. 

The pancreas is the primary producer of the most common digestive enzymes secreted into the small intestine: amylase, lipase, and protease enzymes.

The most common digestive enzymes are: 

  • Amylase: Breaks down carbohydrates into sugar
  • Lipase: Breaks down fats into fatty acids
  • Protease: Breaks down protein into amino acids

The salivary glands produce salivary amylase, an enzyme which begins the breakdown of carbohydrates in the mouth. 

The stomach secretes a variety of digestive acids and enzymes. The parietal cells in the stomach lining produce intrinsic factor that helps absorb vitamin B12, while the chief cells secrete pepsin, a protein-digesting enzyme. 

The brush border produces enzymes including lipase for fat digestion, peptidase for peptide breakdown, and sucrase, maltase, and lactase for the breakdown of various sugars, including sucrose, maltose, and lactose, respectively.

How Enzymes Aid Digestion

Digestive enzymes enhance nutrient absorption by breaking down complex food molecules into simpler compounds. They ensure the body can efficiently extract essential vitamins, minerals, water, and other nutrients, which are critical for sustaining energy levels and overall health.

A digestive enzyme deficiency can lead to GI symptoms, such as lactose intolerance. Lactose is a sugar naturally found in animal milk products. 

As much as 68% of the world's population may be affected by lactose intolerance. This condition is caused by low levels of the lactase digestive enzyme, which results in symptoms after ingesting lactose products. 

Foods that Boost Enzyme Production

Digestive enzymes can also be obtained naturally through foods.

Pineapple, Papaya, and Other Natural Sources

Various foods, such as tropical fruits and fermented vegetables, contain digestive enzymes that can help speed up the breakdown of specific nutrients. 

Some evidence indicates that consuming enzyme-rich foods may support digestion. However, individual responses may vary.

Foods that Contain Naturally Occurring Digestive Enzymes

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Benefits of a Balanced Diet

Nutrition significantly impacts the health of the digestive system, and a balanced diet can help improve gut health

Adjusting diet may influence gut health and inflammation, though individual responses vary.

Beneficial nutrition choices help improve digestion and contribute to overall health by ensuring the assimilation of essential nutrients.

Tips for Better Digestive Health 

There are a variety of recommendations that can be helpful to improve digestive health. Dietary habits, including plant-based fiber, help support the microbiome's function and diversity, improving GI health and immune resilience. 

High-Fiber Foods

Plant-based high-fiber foods include whole grains, vegetables, legumes, nuts, seeds, fruit, and herbs, which are packed with phytonutrients and have been shown to support a healthy inflammatory response. 

Common fiber-rich foods include: 

  • Whole grains: barley, brown rice, oats, quinoa, whole wheat etc. 
  • Cruciferous Vegetables: broccoli, brussel sprouts, cabbage, cauliflower, etc.
  • Dark Leafy Greens: arugula, bok choy, collard greens, kale, spinach, swiss chard, etc.
  • Squashes: butternut squash, delicata squash, pumpkin, zucchini etc.
  • Legumes: black beans, chickpeas, edamame, lentils, navy beans, split peas etc. 
  • Nuts and seeds: almonds, chia seeds, flaxseeds, pumpkin seeds, walnuts, etc.
  • Fruit: apple, avocado, coconut, kiwi, pear, raspberries, strawberries etc. 
  • Herbs and spices: ginger, rosemary, thyme, turmeric, etc.

Probiotic and Prebiotic-rich Options 

Probiotics are found in supplements or fermented foods. Probiotics may help balance microbial health, improve metabolites, modulate the immune response, and decrease systemic inflammation. Consult a healthcare professional before starting probiotic supplements.

Microbial-rich fermented foods have been shown to reduce inflammation, increase microbial diversity, and modulate the immune response. Fermented foods include:

  • Kefir
  • Kimchi
  • Kombucha
  • Natural Yogurt
  • Sauerkraut
  • Tempeh

Prebiotics are typically found in high-fiber foods. The gut microbiome transforms prebiotics into short-chain fatty acids (SCFAs) that enter circulation and can influence multiple systems, including the central nervous system, cardiovascular, immune, and GI tract. 

Incorporating prebiotics into a balanced diet can help improve microbial diversity and health. Prebiotic-rich foods include: 

  • Artichoke
  • Asparagus
  • Banana
  • Chicory
  • Garlic
  • Jerusalem artichoke
  • Leek
  • Oat
  • Onion
  • Shallots
  • Soybean

However, there are many reasons why a Certified Nutritionist or healthcare practitioner may or may not recommend specific foods. 

Symptom tracking and GI testing can help define interventions that fit into patients' lives and align with their specific needs.

Lifestyle Changes

Lifestyle changes such as hydration, stress management, and exercise can support a healthy digestive system.

Importance of Hydration 

Adequate hydration during or after a meal helps break down food and absorb nutrients along the GI tract. 

Drinking adequate water throughout the day can reduce the risk of constipation and help produce mucus that protects the digestive tract. 

Stress Management Techniques 

Stress can increase the digestive system's sensitivity, leading to intestinal permeability, GI symptoms, and altered gut microbial balance. 

Practices such as meditation and prioritizing stress relief can help alleviate digestive symptoms by supporting the gut-brain axis and GI function. 

Stress management practices include: 

  • Breathwork, such as deep belly or diaphragmatic breathing, can help with GI motility by stimulating the parasympathetic nervous system and gently massaging the abdominal organs through the movement of the diaphragm muscle. 
  • Mindfulness practices can reduce anxiety, depression, and stress, improving the gut-brain connection. Mindful eating practices support sleep quality and can improve digestive and immune function. 
  • Meditation helps balance the gut microbiome and increase beneficial bacterial species in the GI tract. It can provide stress relief, emotional balance, and a sense of calm.  

Benefits of Regular Exercise  

A variety of physical activities can improve gut health. Exercise can stimulate digestion and trigger positive changes to the gut microbiome and GI tract function. 

Exercise enhances gut microbiome diversity, increases SCFA production, improves nutrient utilization, and modulates neural and hormonal pathways, improving intestinal barrier integrity. 

Even gentle movement, like daily walks, can decrease inflammation and fewer GI disturbances. 

Seeking Professional Guidance 

Digestive health is complex, and dysfunction can lead to various symptoms that differ between individuals. 

Symptoms of Common Digestive Disorders

If symptoms are persistent or chronic, such as abdominal pain, chronic bloating, acid reflux, or significant changes in bowel habits, these may be signs to consult with a healthcare provider. 

Symptoms of common digestive disorders may include: 

  • Heartburn
  • Indigestion
  • Nausea
  • Abdominal Pain 
  • Gas
  • Diarrhea
  • Constipation 
  • Hemorrhoids 

Importance of Professional Diagnosis

Working with a nutritionist, gastroenterologist, or primary care provider can lead to personalized solutions that address specific concerns. These professionals can help create a comprehensive gut health plan that addresses a range of symptoms, including both mild and ongoing issues. 

Healthcare providers can create individualized interventions based on specific needs, such as recommendations for therapeutic diets, probiotic or digestive enzyme supplements, or additional testing. 

Personalized interventions can significantly improve gut health and enhance overall digestive function. Working with a qualified professional to improve your gut health can help you navigate the complexities of the digestive system.

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Key Takeaways

  • The digestive system is intricate, hard-working, and foundational for overall well-being. Various factors influence digestive health, and symptoms differ between individuals.
  • Nutrition interventions, including a whole-food diet incorporating various plant-based fiber and fermented foods, can help support digestive health and the gut microbiome. 
  • Lifestyle modifications such as stress management techniques and exercise can improve gut health and fewer GI disturbances. 
  • Personalized health and nutrition interventions including GI testing, are the most effective method for addressing symptoms and navigating gut health that are specific to each individual. 
  • Working with a qualified professional to optimize digestion and gut health is crucial for well-being, mood regulation, immune function, and overall health. 
The information in this article is designed for educational purposes only and is not intended to be a substitute for informed medical advice or care. This information should not be used to diagnose or treat any health problems or illnesses without consulting a doctor. Consult with a health care practitioner before relying on any information in this article or on this website.

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